Your query (ID 164303827039781) is complete
Porter 5.0 response
Subject: Porter 5.0 response to 17 queries
Query_name: Atlas
Query_length: 172
SEQ MGRKGHKTRRKVKVHSKVHPPQKIKAKLPKRDKRSTLRPKINNSKVFHVN
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
98888765432101257889852001489777776678876766310134
SS8 CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEECTT
98421433321100121136520000277423223234522114100000
SEQ CCKYKIRSRPMRRNQCNLATQCPSHTVAIAPSVPLLHHPVRRKVVHMPET
SS3 CCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
31122113543544222320057761111687665677655540237750
SS8 CEEEEEEECCCCCCCEEEEEECCTSCEEECCCCCCTTCCCCCCECCCCSE
00233210111100000002132000320310141102412210015401
SEQ VVMHMRNMEDARRVAVKHRRTLIQTHVPSPDVDDDEDTHQIDRRSRQAYR
SS3 EEEECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
34420220000122201343012210478877776431001233334431
SS8 EEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
45530010111232111011023321256221321001112234334332
SEQ MGQMRPLSSDVDVDDMDVDPFQ
SS3 CCCCCCCCCCCCCCCCCCCCCC
1453567765566666678889
SS8 TTCCCCCCCCCCTTCTTCCTTC
0212353321240040025219
Query_name: DM1
Query_length: 162
SEQ MSARRHSGIILVLCCINLSYSYRIIESNEVPKTCPALNKDIIFEEPHLNN
SS3 CCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEECCCCCC
97333431123333320001245553166776574335312440355567
SS8 CCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCTCCCEEEEECCCCCC
96111110245555542113455664000351150000003553122110
SEQ NQREFYDVREIPRRLHFNSNKKEIQSENWLLRIIRIKTINDGPRHKVTEI
SS3 CCCEEEEEECCCCCCECCCCCCEECCHHHHHEHHHEEECCCCCCCCEEEE
74102211003431001367520102012100000000157886300121
SS8 CCEEEEEEEECCCEEEECTTCEEEECHHHHEEEEEEEEECCSCCCEEEEE
01013433221300121100102211110001000000001011001342
SEQ KEDKHMDGFAKRLFNILKKTLKMHEPSYKHNNDQKDLFVLKKNHFPPEHH
SS3 CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHECCCCCCCCCC
14543005899999999887410465445565300010000246996542
SS8 CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECCCCCCCCC
01100026899999999987520124322221101000110001153121
SEQ IVKREPVHYNYM
SS3 CCCCCCCCCCCC
001366411359
SS8 EECCCCCCCCCC
000135200149
Query_name: DM2
Query_length: 65
SEQ MNRIRRMCERLPHKLHFNFGAFLATAYKSTAFQQTRRRRRQLVGSLRRIP
SS3 CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
94256664115421100035678877543566677777776654430154
SS8 CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
94467765300100012256788887664567778888887765541002
SEQ AGYGRLLLLRAFPRG
SS3 CHHHHHHHHHHCCCC
203578888628889
SS8 HHHHHHHHHHHSCCC
024689998741569
Query_name: DM3
Query_length: 89
SEQ MGTSMEEDYRMQDATFCSCFHVFMAQIIAVINNNKNKMAGQDQDERIGSW
SS3 CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
99863000000100123567899999999987411002466413456677
SS8 CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
99430121111112344678999999999998644320002345677888
SEQ FLRTGQRIGAAQRRGLKDELRDVDADAISTEFCSINDKL
SS3 HHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHCCCC
776312455665410045542101445555543100249
SS8 HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
887655666776531256653210666666664331039
Query_name: DM4
Query_length: 70
SEQ MSCVTKESPPTSNSNGNSNSKNSYNNNSNGKSGSCHTQATTTTTTVRDRN
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEEEEEEECC
94201357996577887666543224678876511220000135675078
SS8 CCCEECCCCCCCCCSSCCCCCCCEECCCTSCCCEEEEEEEEEEEEEECTT
94011013653331013212100001310112013432112346776055
SEQ GGEITWRATSGNCGLMNIPQ
SS3 CCEEEEEECCCCCCCCCCCC
96478764057742000579
SS8 SCEEEEEEECSSCEEEECCC
23578875201010121379
Query_name: DM5
Query_length: 67
SEQ MRPPEVYHVYSHSQNHLAERQEIGRGVRSGIKCTITGKSVGAIIATLQKT
SS3 CCCCCEEEEECCCCCCHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCC
99992245420453200111100344222203430354213444443104
SS8 CCCCEEEEEEECCHHHHHHHHHHTTTEEEEEEEEEESSCHHHHHHHHHHT
99660456541010012222111010000125653000035556554420
SEQ GTSKKVFQNYIDDFIEL
SS3 CCCHHHHHHHHHHHCCC
75312222222210149
SS8 SCCHHHHHHHHHHHHCC
01144444444432139
Query_name: DM6
Query_length: 119
SEQ MREVSAIFCNLALLSGFPLSIWQLLGLQSAAVFGLRSPGVSVRLLESPVP
SS3 CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
94034667777764177512665641233443113588731332116788
SS8 CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCCTTCEEEEEECSST
93135777888876033501556753334444200122212454311004
SEQ GLWSVVPGHSHYRCMCREVTPHGCVRSSLFLVRAKIQQLQKLKLLPLAVV
SS3 CCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
72120478642023201247774302467777777777764200012211
SS8 TEEEECTTCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTHHHHHHH
40332323011245431013010024677877788888875310000000
SEQ ATHRNIERKLSDMKIVKIK
SS3 HHHHHHHHHHHCCCEEECC
2222233222013033219
SS8 HHHHHHHHHHHHCEEEECC
1233433222101144319
Query_name: DM7
Query_length: 120
SEQ MMRRHLACGGRNSRPQKDTVTDADADADADVDTDTDASVSAAPRPIDLAK
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
97644456787788877777766666666667787764346778765557
SS8 CCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCSCCCCCCCCCCCCCCCC
98422111111123652332210211001212000122001243533213
SEQ PKRTEDNESCSPPKATNPGPHATIAATATPTAAETPAETATAAEPATGGK
SS3 CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHCCCCCCCCCCC
87778886557987789998401100147765667410000122334785
SS8 CCCCSSCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCC
52330012221453311112112211012431212200000002221012
SEQ RKTDRAEASSGDLWPCLLYG
SS3 CCCCCCCCCCCCCCCHHCCC
55765444677751000269
SS8 CCCCCCCCCCSCCCHHHCCC
33321112210210011049
Query_name: DM9
Query_length: 82
SEQ MARNENKTQTESGSERGKWKWQENSNHKLGIYLRSVNDYHLKCARLPPKN
SS3 CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEECCCCCC
98777765566777676301211578511357640243111220279631
SS8 CCCCCCCCCCCCCCCCCCEEEEECTTCEEEEEEEEETCEEEEEEECCCTC
98342233332103100113331100113577752000123443236200
SEQ QLLEKAQPTEWVVVGGAGWPEWVTRRTRQQKE
SS3 CHHHCCCCCEEEEECCCCCCHHHHHCCCCCCC
00110487405774267752011110123579
SS8 CHHHHCCCCEEEEEECTSCCHHHHHHHHCCCC
00110024026875110010222221001369
Query_name: DM10
Query_length: 98
SEQ MYFPTTPVTSRSGYLRGRKRINPHPISQLQSGKPTSEDDQDSTNVDLEES
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
97899987677764357643577742112479988877777787783214
SS8 CCCCCCCCCCCCSCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCC
97531132220001100221234531000100375300222332361002
SEQ ISSSYSSETDISMNVEAQDTSTDSGLDTSQESSNEPRYSLRKMDKNPL
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
555555422222222225677776665556678988777766678999
SS8 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
222113211111111112233222123333331135324344432589
Query_name: DM14
Query_length: 346
SEQ MLWIRVLVAYSIILFGSFHGECAAVHKDNNTYNSTKNSLIEAQSIGRIVN
SS3 CCEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHEEE
93000001112232123443001110357643444320000000000000
SS8 CCEEEEEEEEEEEEEECCTHHHHHHHHTTCCCCCCHHEEEEHHHHHEEEE
92010011233343210000000000000010110000000000000121
SEQ RVNQKEINQNILPPPSYLGETTRTSSTDPENPCPHDISQLNAAPEAKINE
SS3 CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCECCC
02401210134899433554222456799999976402211576200035
SS8 EECHHHHHHCCCCCCCGCCCCCCCCCCCTTSCCCCCHHHHHCCCEEEECS
10213221001067100001000232042214431300010033012100
SEQ NPSATHIKYGSQVNTQSTYSSDFQLQIQNPRPVQHIHYHYIVPNSTPKPI
SS3 CCCCCEEEECCEEECCCEECCCEEEEEECCCCCEEEEEEEEECCCCCCCE
88630355301110100001312577616886204778887048888750
SS8 CCTCEEEEEEEEEEEEEEEEEEEEEEEECCSCCEEEEEEEEECSSCCSCE
20001566522332122320014678633113015788887010010052
SEQ INYVTQSQSDFNAHNVVNSVGQPYSPIDPRPSHIAYESNQQHSNREVVSV
SS3 EEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEE
45542045555420023024665577788875035422555554046763
SS8 EEEEEECCCCCCCEEEEECTCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
66653121000101234200022141011252246640101100157774
SEQ NPLSSAVDNGGFIYDSPDEHQGQASENTSVYEFRDPGQTIKDELQREEAL
SS3 CCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
25532224662476066545654444422677507885201233333332
SS8 ECCCCEECTTEEEEECCCCCCCCCCTCCEEEEEECTTCCEHHHHHHHHHH
01000000210577150000001220003688605333201333333222
SEQ LKTSSEFSISQPISNHQVDVVSPFPNQTEVYFIKYYDEHNKTTTSPESQI
SS3 HHCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCE
20244112202444431244225788623789986304666446853201
SS8 HHHCCEEEEECCCCCCEEEEECSSTTCCEEEEEEEEETTCCCCCCCTCEE
11011023420221002355400021104799987403322110400002
SEQ KMDTSSEVSDGSGLIDIRAGIAETMDGHIETTTPYNEHSAYNVPLN
SS3 EECCCCCCCCCCCEEEEEECEEECCCCCEEECCCCCCCCCCECCCC
2014431136873144320001103541331267655421001389
SS8 EEECCCECCCSCEEEEEEEEEEEECTTEEEECCCCCCCCEEEECCC
3200010010000355542223310201442022021111220189
Query_name: DM16
Query_length: 127
SEQ MEPSFSNTNKSELQNQLRVERALQDKYLKEFSSMADELNHLIDGTTPSHI
SS3 CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
99886666656889999999998888887766567888876406774310
SS8 CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
99652210367899999999999999988776677888877631133201
SEQ ETYEYLDTVDTESGRSLEEEKKLTNFFYKLKSDLQKLFREIVENPKYLNE
SS3 HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
12322014567777666889999999999887889998888627346888
SS8 HHHHHHHCCCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
13443210120001268999999999999999999999998744224788
SEQ IRDSTIIRDNIDLLDEADAFEGSMNML
SS3 HHHHHHHHHHHHHHCHHHHHCCCCCCC
765323332222201344420233469
SS8 HHHHHHHHHHHHHHCHHHHHHTCCCCC
876444444331210455531011169
Query_name: HB
Query_length: 141
SEQ MHIDIHPPRHRSSDLKSIIPSPVTMLANAQDTSFKLHNALVKELQANGSQ
SS3 CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
96556898877410110277831000012210134456777777524888
SS8 CCCCCCCCCCCCHHHHHCSCCCHHHHHCCCHHHHHHHHHHHHHHHHTTCC
97343254333200110004401000000001234556788888641231
SEQ DPSPPSSPPYSHLRIKSPKTVPVTLPRTKTSLERAYSPCSSSAVREGGGR
SS3 CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
99999999864112127885422257766643101367765533247875
SS8 CCCCCCCCCCCEEEEECCSCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
33133202121134304101010035120021010031121011100012
SEQ QGREDRAGEDVRQGGRGRGGCEAGRTEQGRMSVAAPSGPHL
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
66555667643337776675323555566300015888989
SS8 CCCCCCTTCCCCCCCCCCCCCCTCCCCTSCEEEECCCCCCC
22213210221010000001100012000101213420279
Query_name: HG
Query_length: 199
SEQ MDLPGREVSGTGAVGMDLPGGEVSGTGAVGMDLPGGEPSGTRTVWQGGEG
SS3 CCCCCCECCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCEEEEECCCC
98897300266520112688502035403201688877653256525775
SS8 CCCCCCEECSSSCEEEECTTCEEEETEEEEEECCTSCCCSCEEEEECSTT
97510010100001210301124200014431401034101356531010
SEQ HRCCRDGPTRRVVEQHRCCRDGPTQWGESSGTGAVGMDPPSGGSRAAQVL
SS3 CEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEEEE
14532578303554212305788421123577501037998854101211
SS8 EEEEESSSEEEEEEEEEEECSSCCCEEECCSSSCEECCCCCSCCEEEEEE
05651130024665334420131201100100003201231002012322
SEQ SGWTYPVGGAEGHMRRQDGPTRQGVEQHTCHRDGAALGRPFSWEHLPSSQ
SS3 CCCEECCCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
02110246654310104788534420223205774136754200167777
SS8 EEEEECCSCCCEEEEECSSCCCCCCEEEEEETTSCETTCCCCEEECCCCS
21132000010002201030210001344400202000131112145310
SEQ GQSNKLQSWPTGAGPVRLETDHTHGPSSLHTKTSILKELGSVLPSAEGP
SS3 CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
7654212357788740331356778765432023344313436666799
SS8 SCCCCECCCCTTCCCEEEECCCCCCCCCCCHHHHHHHHHTCCCCCCCCC
0221000023101121441132100221110234455530111442399
Query_name: HH
Query_length: 124
SEQ MPVSEEQPARTAGLPKTGPVGGLPETCLIPMPAPSIPRLMEGRPKAKEGQ
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
99876776545699987887888754432268987320025887656666
SS8 CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCTTCCCCCTTC
99552235333114643022104511211043433220011135332002
SEQ RRGKVKKRSSREEAGGTQKRSRGLTLFLCFKGVSMNAVGEKEALFQEENS
SS3 CCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCECCCCCCCEECCCCCC
54401113565445875322454046676313100124531000012454
SS8 CCEEEEECCCCCCCCCCCCCCTTEEEEEEETTEEEECTSCEEEEECCTCC
20022210220110002000100156776501122100010111100001
SEQ DVFVSRALATTKPVFLLCSNGREK
SS3 CCEEEHHCCCCCCEEEEECCCCCC
200000002577435651278439
SS8 HEEEEHHHCCSCCEEEEEETSCCC
001100000000246752000139
Query_name: HI
Query_length: 122
SEQ MTKACPGQCGFFPTRSLLPTTSFHTPFSVLAINQSPHSGQDPLCPLLPST
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
97678886665566444776544566302321158999988877767542
SS8 CCCCCTTCCCCCCCCCCSCCCCCCCCCEEEEEECCTTCCCCTTCCCCCCC
98224221200232010042111020002332014121014112212420
SEQ ALSRQASVTSSVLRNVKDVPRHRSTENRERPMFSTECGWENKHHQQVRSL
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22222322211011345677766666666665445566544443211111
SS8 CCCCCCCCCCCHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
00101100000000121125233310121242121000111001110000
SEQ KLPGAIPQVPGRGALTSPRATQ
SS3 CCCCCCCCCCCCCCCCCCCCCC
3788777679987656876679
SS8 CCTTCCCCCCTSCCCCCCCCCC
0433135440000211321369
Query_name: HJ
Query_length: 137
SEQ MEREGPSDKNVLPLPPFPLALHSNPRVGGQGRGSPHLLPLPLPLHPGSPA
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
98899988777889998654457987778888887656688888999976
SS8 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCTTCCT
99652223113344623322211321111110031011323352323010
SEQ HQWPSRPGHARARTHTPAALTIAHTHTHTHQQTKGLDTPVPSRPPGQGGR
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
56788998642235775421112356666554568877788999998888
SS8 CCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12332111120001012110001221211122201222445326001232
SEQ GIPSPGPPQGKLGAASCGGEGDTVPQWEGARKVGGSP
SS3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8789999987766556789888677544433358899
SS8 CCCCCCCCCCCCCCCCCCCCSCCCCCCCTCCCCCCCC
1456312421121111111002235320021111399
Query served in 3007 seconds
Response available at the URL: http://distilldeep.ucd.ie/~gianluca/distill_results/query164303827039781.html
Quick explanation of output formats
SS3 line - 3 class secondary structure:
H = Helix (DSSP classes H, G and I)
E = Strand (DSSP classes E and B)
C = Coil (DSSP classes S, T and .)
SS8 line - 8 class secondary structure:
classes as per DSSP, except . -> C
The lines following the SS3 and SS8 lines are confidence values for, respectively, 3 and 8 class predictions,
with 9 = maximal confidence and 0 = very little confidence.
For Porter please cite one or more of the following:
M.Torrisi, G.Pollastri.
"Protein Structure Annotations",
in Essentials of Bioinformatics, Volume I. Understanding Bioinformatics: Genes to Proteins,
Springer Nature, 2019.
M.Torrisi, M.Kaleel, G.Pollastri.
"Deeper Profiles and Cascaded Recurrent and Convolutional Neural Networks for state-of-the-art Protein Secondary Structure Prediction",
Scientific Reports, 9: 12374, 2019.
M.Torrisi, M.Kaleel, G.Pollastri.
"Porter 5: state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes",
bioRxiv 289033, 2018.
C.Mirabello, G.Pollastri.
"Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure
and relative solvent accessibility",
Bioinformatics, 29(16):2056-2058, 2013, doi: 10.1093/bioinformatics/btt344
G.Pollastri, A.McLysaght.
"Porter: a new, accurate server for protein secondary structure prediction".
Bioinformatics, 21(8):1719-1720, 2005.
C. Mooney, G.Pollastri "Beyond the Twilight Zone: Automated prediction of
structural properties of proteins by recursive neural networks and remote
homology information" Proteins, 77(1), 181-90, 2009.
G.Pollastri, A.J.M.Martin, C.Mooney, A.Vullo. "Accurate prediction of
protein secondary structure and solvent accessibility by consensus combiners
of sequence and structure information" BMC Bioinformatics, 8:201, 2007.